Command line: [exonerate -m p2g --showtargetgff -q ./gpx3human.fa -t ./gpx3human/subseq/gi|432098791|gb|KB109247.1|_subseq.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000021_2.0 # Protein # Glutathione peroxidase 3 (GPx3) # Human (Homo sapiens)
        Target: gi|432098791|gb|KB109247.1|:subseq(1939698,100182) Myotis davidii unplaced genomic scaffold scaffold18, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 916
   Query range: 28 -> 226
  Target range: 48237 -> 51006

    29 : LysMetAspCysHisGlyGlyIleSerGlyThrIleTyrGluTyrGlyAlaLeuThrIle :    48
         :!!! !|||||||||!.!|||:!:|||||||||||||||||||||||||||||||||:!!
         GlnThrAspCysHisAlaGlyValSerGlyThrIleTyrGluTyrGlyAlaLeuThrLeu
 48238 : CAGACGGACTGCCATGCTGGTGTGAGCGGCACCATCTATGAGTATGGAGCCCTCACCCTC : 48295

    49 : AspGlyGluGluTyrIleProPheLysGlnTyrAlaGlyLysTyrValLeuPheValAsn :    68
         :!!|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         AsnGlyGluGluTyrIleProPheLysGlnTyrAlaGlyLysTyrValLeuPheValAsn
 48296 : AACGGGGAGGAGTACATCCCCTTCAAGCAGTATGCCGGCAAATACGTCCTCTTTGTCAAC : 48355

    69 : ValAlaSerTyrUnkGlyLeuThrGlyGlnTyrIle{G}  >>>> Target Intron  :    81
         ||||||||||||   |||||||||.!!||||||:!!{|}           1110 bp   
         ValAlaSerTyr***GlyLeuThrSerGlnTyrVal{G}++                   
 48356 : GTGGCCAGCTACTGAGGCCTGACGAGCCAGTACGTT{G}gt................... : 48397

    82 : 1 >>>>  {lu}LeuAsnAlaLeuGlnGluGluLeuAlaProPheGlyLeuValIleLeu :    97
                 {||}||||||||||||||||||||||||  !|||||||||||||||||||||
               ++{lu}LeuAsnAlaLeuGlnGluGluLeuGlnProPheGlyLeuValIleLeu
 48398 : ......ag{AA}CTGAATGCACTACAGGAAGAGCTGCAACCATTTGGTCTGGTCATTCTG : 49552

    98 : GlyPheProCysAsnGlnPheGlyLysGlnGluProGlyGluAsnSerGluIleLeuPro :   117
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         GlyPheProCysAsnGlnPheGlyLysGlnGluProGlyGluAsnSerGluIleLeuPro
 49553 : GGCTTCCCCTGCAACCAATTTGGAAAACAGGAGCCAGGAGAGAACTCGGAGATTCTACCT : 49612

   118 : ThrLeu{Ly}  >>>> Target Intron 2 >>>>  {s}TyrValArgProGlyGly :   126
         :!!|||{||}            445 bp           {|}:!!|||||||||||||||
         SerLeu{Ly}++                         ++{s}HisValArgProGlyGly
 49613 : TCCCTC{AA}gt.........................ag{G}CATGTTCGACCAGGTGGG : 50084

   127 : GlyPheValProAsnPheGlnLeuPheGluLysGlyAspValAsnGlyGluLysGluGln :   146
         |||!:!|||||||||||||||||||||||||||||||||||||||||||||!!.||||||
         GlyTyrValProAsnPheGlnLeuPheGluLysGlyAspValAsnGlyGluAsnGluGln
 50085 : GGCTACGTCCCCAATTTCCAACTCTTTGAGAAAGGAGATGTGAACGGGGAGAACGAGCAG : 50144

   147 : LysPheTyrThrPheLeuLys  >>>> Target Intron 3 >>>>  AsnSerCysP :   157
         ||| !!|||||||||||||||            620 bp           ||||||||||
         LysValTyrThrPheLeuLys++                         ++AsnSerCysP
 50145 : AAGGTCTACACGTTCCTGAAGgt.........................agAACTCCTGCC : 50797

   158 : roProThrSerGluLeuLeuGlyThrSerAspArgLeuPheTrpGluProMetLysValH :   177
         ||||||||!!!||||||||||||:!! !! ! ||||||||||||||||||||||||:!!|
         roProThrThrGluLeuLeuGlySerProLysArgLeuPheTrpGluProMetLysIleH
 50798 : CTCCCACCACGGAGCTCCTGGGCTCGCCTAAACGCCTCTTCTGGGAACCCATGAAGATCC : 50857

   178 : isAspIleArgTrpAsnPheGluLysPheLeuValGlyProAspGlyIleProIleMetA :   197
         |||||||||||||||||||||||||||||||||||||||||||||||! !||||||||||
         isAspIleArgTrpAsnPheGluLysPheLeuValGlyProAspGlyLysProIleMetA
 50858 : ATGACATCCGCTGGAACTTTGAGAAGTTCCTGGTGGGGCCGGACGGTAAACCCATCATGC : 50917

   198 : rgTrpHisHisArgThrThrValSerAsnValLysMetAspIleLeuSerTyrMetArgA :   217
         |||||:!!|||||||||||||||||||||||||||||||||||||||:!!|||:!!|||.
         rgTrpTyrHisArgThrThrValSerAsnValLysMetAspIleLeuAlaTyrLeuArgG
 50918 : GCTGGTACCACCGGACCACGGTCAGCAACGTCAAGATGGACATCCTGGCCTACTTGAGGG : 50977

   218 : rgGlnAlaAlaLeuGlyValLysArgLys :   226
         .!||||||||||||!.!|||:!!..!|||
         luGlnAlaAlaLeuAlaValGluGluLys
 50978 : AGCAGGCAGCCCTGGCGGTCGAAGAGAAG : 51006

vulgar: SPP00000021_2.0 28 226 . gi|432098791|gb|KB109247.1|:subseq(1939698,100182) 48237 51006 + 916 M 52 156 S 0 1 5 0 2 I 0 1106 3 0 2 S 1 2 M 38 114 S 0 2 5 0 2 I 0 441 3 0 2 S 1 1 M 33 99 5 0 2 I 0 616 3 0 2 M 73 219
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-27
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|432098791|gb|KB109247.1|:subseq(1939698,100182)	exonerate:protein2genome:local	gene	48238	51006	916	+	.	gene_id 1 ; sequence SPP00000021_2.0 ; gene_orientation +
gi|432098791|gb|KB109247.1|:subseq(1939698,100182)	exonerate:protein2genome:local	cds	48238	48394	.	+	.	
gi|432098791|gb|KB109247.1|:subseq(1939698,100182)	exonerate:protein2genome:local	exon	48238	48394	.	+	.	insertions 0 ; deletions 0
gi|432098791|gb|KB109247.1|:subseq(1939698,100182)	exonerate:protein2genome:local	splice5	48395	48396	.	+	.	intron_id 1 ; splice_site "GT"
gi|432098791|gb|KB109247.1|:subseq(1939698,100182)	exonerate:protein2genome:local	intron	48395	49504	.	+	.	intron_id 1
gi|432098791|gb|KB109247.1|:subseq(1939698,100182)	exonerate:protein2genome:local	splice3	49503	49504	.	+	.	intron_id 0 ; splice_site "AG"
gi|432098791|gb|KB109247.1|:subseq(1939698,100182)	exonerate:protein2genome:local	cds	49505	49622	.	+	.	
gi|432098791|gb|KB109247.1|:subseq(1939698,100182)	exonerate:protein2genome:local	exon	49505	49622	.	+	.	insertions 0 ; deletions 0
gi|432098791|gb|KB109247.1|:subseq(1939698,100182)	exonerate:protein2genome:local	splice5	49623	49624	.	+	.	intron_id 2 ; splice_site "GT"
gi|432098791|gb|KB109247.1|:subseq(1939698,100182)	exonerate:protein2genome:local	intron	49623	50067	.	+	.	intron_id 2
gi|432098791|gb|KB109247.1|:subseq(1939698,100182)	exonerate:protein2genome:local	splice3	50066	50067	.	+	.	intron_id 1 ; splice_site "AG"
gi|432098791|gb|KB109247.1|:subseq(1939698,100182)	exonerate:protein2genome:local	cds	50068	50167	.	+	.	
gi|432098791|gb|KB109247.1|:subseq(1939698,100182)	exonerate:protein2genome:local	exon	50068	50167	.	+	.	insertions 0 ; deletions 0
gi|432098791|gb|KB109247.1|:subseq(1939698,100182)	exonerate:protein2genome:local	splice5	50168	50169	.	+	.	intron_id 3 ; splice_site "GT"
gi|432098791|gb|KB109247.1|:subseq(1939698,100182)	exonerate:protein2genome:local	intron	50168	50787	.	+	.	intron_id 3
gi|432098791|gb|KB109247.1|:subseq(1939698,100182)	exonerate:protein2genome:local	splice3	50786	50787	.	+	.	intron_id 2 ; splice_site "AG"
gi|432098791|gb|KB109247.1|:subseq(1939698,100182)	exonerate:protein2genome:local	cds	50788	51006	.	+	.	
gi|432098791|gb|KB109247.1|:subseq(1939698,100182)	exonerate:protein2genome:local	exon	50788	51006	.	+	.	insertions 0 ; deletions 0
gi|432098791|gb|KB109247.1|:subseq(1939698,100182)	exonerate:protein2genome:local	similarity	48238	51006	916	+	.	alignment_id 1 ; Query SPP00000021_2.0 ; Align 48238 29 156 ; Align 49507 82 114 ; Align 50069 121 99 ; Align 50788 154 219
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis